2

Deep ancestry of collapsing networks of nomadic hunter--gatherers in Borneo
Abstract Theories of early cooperation in human society often draw from a small sample of ethnographic studies of surviving populations …
J Stephen Lansing, Guy S Jacobs, Sean S Downey, Peter K Norquest, Murray P Cox, Steven L Kuhn, John H Miller, Safarina G Malik, Herawati Sudoyo, Pradiptajati Kusuma
Cite Project DOI
Genetic architecture of gene regulation in Indonesian populations identifies QTLs associated with global and local ancestries
Lack of diversity in human genomics limits our understanding of the genetic underpinnings of complex traits, hinders precision …
Heini M Natri, Georgi Hudjashov, Guy Jacobs, Pradiptajati Kusuma, Lauri Saag, Chelzie Crenna Darusallam, Mait Metspalu, Herawati Sudoyo, Murray P Cox, Irene Gallego Romero, Nicholas E Banovich
Cite DOI
Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago
Indonesia is the world’s fourth most populous country, host to striking levels of human diversity, regional patterns of …
Heini M Natri, Katalina S Bobowik, Pradiptajati Kusuma, Chelzie Crenna Darusallam, Guy S Jacobs, Georgi Hudjashov, J Stephen Lansing, Herawati Sudoyo, Nicholas E Banovich, Murray P Cox, Irene Gallego Romero
Cite DOI
Multiple deeply divergent Denisovan ancestries in Papuans
Genome sequences are known for two archaic hominins-Neanderthals and Denisovans-which interbred with anatomically modern humans as they …
Guy S Jacobs, Georgi Hudjashov, Lauri Saag, Pradiptajati Kusuma, Chelzie C Darusallam, Daniel J Lawson, Mayukh Mondal, Luca Pagani, François-Xavier Ricaut, Mark Stoneking, Mait Metspalu, Herawati Sudoyo, J Stephen Lansing, Murray P Cox
Cite DOI
Evidence of Austronesian genetic lineages in East Africa and south Arabia: Complex dispersal from Madagascar and southeast Asia
The Austronesian dispersal across the Indonesian Ocean to Madagascar and the Comoros has been well documented, but in an unexplained …
Nicolas Brucato, Veronica Fernandes, Pradiptajati Kusuma, Viktor Černý, Connie J Mulligan, Pedro Soares, Teresa Rito, Céline Besse, Anne Boland, Jean-Francois Deleuze, Murray P Cox, Herawati Sudoyo, Mark Stoneking, Luisa Pereira, François-Xavier Ricaut
Cite DOI
The Comoros show the earliest Austronesian gene flow into the Swahili Corridor
At the dawn of the second millennium, the expansion of the Indian Ocean trading network aligned with the emergence of an …
Nicolas Brucato, Veronica Fernandes, Stéphane Mazières, Pradiptajati Kusuma, Murray P Cox, Joseph Wainaina Ng'ang'a, Mohammed Omar, Marie-Claude Simeone-Senelle, Coralie Frassati, Farida Alshamali, Bertrand Fin, Anne Boland, Jean-Francois Deleuze, Mark Stoneking, Alexander Adelaar, Alison Crowther, Nicole Boivin, Luisa Pereira, Pascal Bailly, Jacques Chiaroni, François-Xavier Ricaut
Cite DOI
Genomic landscape of human diversity across Madagascar
Although situated ∼400 km from the east coast of Africa, Madagascar exhibits cultural, linguistic, and genetic traits from both …
Denis Pierron, Margit Heiske, Harilanto Razafindrazaka, Ignace Rakoto, Nelly Rabetokotany, Bodo Ravololomanga, Lucien M-A Rakotozafy, Mireille Mialy Rakotomalala, Michel Razafiarivony, Bako Rasoarifetra, Miakabola Andriamampianina Raharijesy, Lolona Razafindralambo, Ramilisonina, Fulgence Fanony, Sendra Lejamble, Olivier Thomas, Ahmed Mohamed Abdallah, Christophe Rocher, Amal Arachiche, Laure Tonaso, Veronica Pereda-Loth, Stéphanie Schiavinato, Nicolas Brucato, François-Xavier Ricaut, Pradiptajati Kusuma, Herawati Sudoyo, Shengyu Ni, Anne Boland, Jean-Francois Deleuze, Philippe Beaujard, Philippe Grangé, Sander Adelaar, Mark Stoneking, Jean-Aimé Rakotoarisoa, Chantal Radimilahy, Thierry Letellier
Cite DOI
The last sea nomads of the Indonesian archipelago: genomic origins and dispersal
Pradiptajati Kusuma, Nicolas Brucato, Murray P Cox, Thierry Letellier, Abdul Manan, Chandra Nuraini, Philippe Grangé, Herawati Sudoyo, Fran ̧cois-Xavier Ricaut
Cite DOI
Genomic admixture tracks pulses of economic activity over 2,000 years in the Indian Ocean trading network
The Indian Ocean has long been a hub of interacting human populations. Following land- and sea-based routes, trade drove cultural …
Nicolas Brucato, Pradiptajati Kusuma, Philippe Beaujard, Herawati Sudoyo, Murray P Cox, Fran ̧cois-Xavier Ricaut
Cite
Multi-layered population structure in Island Southeast Asians
Alexander Mörseburg, Luca Pagani, François-Xavier Ricaut, Bryndis Yngvadottir, Eadaoin Harney, Cristina Castillo, Tom Hoogervorst, Tiago Antao, Pradiptajati Kusuma, Nicolas Brucato, Alexia Cardona, Denis Pierron, Thierry Letellier, Joseph Wee, Syafiq Abdullah, Mait Metspalu, Toomas Kivisild
Cite