2

From sporulation to village differentiation: The shaping of the social microbiome over rural-to-urban lifestyle transition in Indonesia
Despite established roles in human health and profound global diversity, microbiome datasets remain biased toward Western urban …
Clarissa A Febinia, Hirzi Luqman, Pradiptajati Kusuma, Lidwina Priliani, Joseph Lewis, Desak Made Wihandani, Gde Ngurah Pinatih, Herawati Sudoyo, Alexandre Almeida, Safarina G Malik, Guy S Jacobs
Cite DOI
Whole blood transcriptomics analysis of Indonesians reveals translocated and pathogenic microbiota in blood
Pathogens found within local environments are a major cause of morbidity and mortality. This is particularly true in Indonesia, where …
Katalina Bobowik, Muhamad Fachrul, Chelzie Crenna Darusallam, Pradiptajati Kusuma, Herawati Sudoyo, Clarissa A Febinia, Safarina G Malik, Christine A Wells, Irene Gallego Romero
Cite DOI
Profiling genetically driven alternative splicing across the Indonesian archipelago
One of the regulatory mechanisms influencing the functional capacity of genes is alternative splicing (AS). Previous studies exploring …
Neke Ibeh, Pradiptajati Kusuma, Chelzie Crenna Darusallam, Safarina G Malik, Herawati Sudoyo, Davis J McCarthy, Irene Gallego Romero
Cite DOI
Deep ancestry of Bornean hunter-gatherers supports long-term local ancestry dynamics
Borneo was a crossroad of ancient dispersals, with some of the earliest Southeast Asian human remains and rock art. The island is home …
Pradiptajati Kusuma, Murray P Cox, Graeme Barker, Herawati Sudoyo, J Stephen Lansing, Guy S Jacobs
Cite Project DOI
Deep ancestry of collapsing networks of nomadic hunter--gatherers in Borneo
Abstract Theories of early cooperation in human society often draw from a small sample of ethnographic studies of surviving populations …
J Stephen Lansing, Guy S Jacobs, Sean S Downey, Peter K Norquest, Murray P Cox, Steven L Kuhn, John H Miller, Safarina G Malik, Herawati Sudoyo, Pradiptajati Kusuma
Cite Project DOI
Genetic architecture of gene regulation in Indonesian populations identifies QTLs associated with global and local ancestries
Lack of diversity in human genomics limits our understanding of the genetic underpinnings of complex traits, hinders precision …
Heini M Natri, Georgi Hudjashov, Guy Jacobs, Pradiptajati Kusuma, Lauri Saag, Chelzie Crenna Darusallam, Mait Metspalu, Herawati Sudoyo, Murray P Cox, Irene Gallego Romero, Nicholas E Banovich
Cite DOI
Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago
Indonesia is the world’s fourth most populous country, host to striking levels of human diversity, regional patterns of …
Heini M Natri, Katalina S Bobowik, Pradiptajati Kusuma, Chelzie Crenna Darusallam, Guy S Jacobs, Georgi Hudjashov, J Stephen Lansing, Herawati Sudoyo, Nicholas E Banovich, Murray P Cox, Irene Gallego Romero
Cite DOI
Multiple deeply divergent Denisovan ancestries in Papuans
Genome sequences are known for two archaic hominins-Neanderthals and Denisovans-which interbred with anatomically modern humans as they …
Guy S Jacobs, Georgi Hudjashov, Lauri Saag, Pradiptajati Kusuma, Chelzie C Darusallam, Daniel J Lawson, Mayukh Mondal, Luca Pagani, François-Xavier Ricaut, Mark Stoneking, Mait Metspalu, Herawati Sudoyo, J Stephen Lansing, Murray P Cox
Cite DOI
Evidence of Austronesian genetic lineages in East Africa and south Arabia: Complex dispersal from Madagascar and southeast Asia
The Austronesian dispersal across the Indonesian Ocean to Madagascar and the Comoros has been well documented, but in an unexplained …
Nicolas Brucato, Veronica Fernandes, Pradiptajati Kusuma, Viktor Černý, Connie J Mulligan, Pedro Soares, Teresa Rito, Céline Besse, Anne Boland, Jean-Francois Deleuze, Murray P Cox, Herawati Sudoyo, Mark Stoneking, Luisa Pereira, François-Xavier Ricaut
Cite DOI
The Comoros show the earliest Austronesian gene flow into the Swahili Corridor
At the dawn of the second millennium, the expansion of the Indian Ocean trading network aligned with the emergence of an …
Nicolas Brucato, Veronica Fernandes, Stéphane Mazières, Pradiptajati Kusuma, Murray P Cox, Joseph Wainaina Ng'ang'a, Mohammed Omar, Marie-Claude Simeone-Senelle, Coralie Frassati, Farida Alshamali, Bertrand Fin, Anne Boland, Jean-Francois Deleuze, Mark Stoneking, Alexander Adelaar, Alison Crowther, Nicole Boivin, Luisa Pereira, Pascal Bailly, Jacques Chiaroni, François-Xavier Ricaut
Cite DOI